NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245263_100310

Scaffold Ga0245263_100310


Overview

Basic Information
Taxon OID3300029696 Open in IMG/M
Scaffold IDGa0245263_100310 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37276
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61018
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (23.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044555Metagenome / Metatranscriptome154N
F064817Metagenome128N
F105375Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0245263_10031075F064817N/AMNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQEYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0245263_10031077F105375N/AMKNNETFQTTQHLDKLVTNLGLQIQELFSLDLGEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245263_10031082F044555N/AMKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPMVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
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