NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135224_1024415

Scaffold Ga0135224_1024415


Overview

Basic Information
Taxon OID3300029753 Open in IMG/M
Scaffold IDGa0135224_1024415 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SRH3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022199Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0135224_10244152F022199N/AMFTLTERLTISAAATATTATIDLASYLNVADRQAIQVHSVDFIFEGTTADEAPTLAMGGSAFANVQLTDLNRGGLVLGNDRDWETFK
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