NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1000269

Scaffold Ga0183757_1000269


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1000269 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31329
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (26.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059467Metagenome / Metatranscriptome134N
F088414Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0183757_100026921F088414N/AMAKILQFNLNKNIDKKNFTKSDMQVFDAVELLLEYAHEAGCNISPIIDSRELGEVIRSLLVFFGKMNGVDPDQLDWEQNVDISNLYTDKGFLASLDKDKD
Ga0183757_100026927F059467AGGAGMKKLTALLIALGFAGVSHAATITGTVEVDISENASDDYISTESIKLGIAGDSGVAFGSIKVKTNASDQFVLDEYSIGANLSDTASVSYGDQGDIFIGGGLEEVGANTIANPSDAGESVMLNISKLSVRGKFTDTDTDISDFDTIQAKYTQGVGSTTLGVSVDHTISTDDNIYAGSLAFAINDKANLTTVITQDASLTDEVAYESMVSIGSLSAYVDGDEADWSKNVGAGYKGTWKDLGYY
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