Scaffold Ga0183826_1058672

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183826_1058672

Scaffold Ga0183826_1058672

Overview

Basic Information
Taxon OID	3300029792 Open in IMG/M
Scaffold ID	Ga0183826_1058672 Open in IMG/M
Source Dataset Name	Marine giant viral communities collected during Tara Oceans survey from station TARA_041 - TARA_Y100000052
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	586
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Indian Ocean: TARA_041
Coordinates	Lat. (^o)	14.6059	Long. (^o)	69.9776	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008031	Metagenome / Metatranscriptome	340	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183826_10586721	F008031	AGGAGG	MATYKSSAGAVLQPGNQINRLSGYNDEGVFGWPGLEAFELIGFAKVTNLAADKASFKSFDLTVPSPDRRPDDRVRDDRTTLVVQASADRPAYIYGASIGIAQDLPAGGLATFPASPVTADLGGTTGELLLLGPNNGGSPFGVPSTQLNGLAAATS

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