Scaffold Ga0239581_1024628

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0239581_1024628

Scaffold Ga0239581_1024628

Overview

Basic Information
Taxon OID	3300029798 Open in IMG/M
Scaffold ID	Ga0239581_1024628 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Alinen Mustajarvi, Finland - AM11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Uppsala University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1558
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Alinen Mustajarvi, Finland

Source Dataset Sampling Location
Location Name	Finland: Alinen Mustajarvi in Hameenlinna
Coordinates	Lat. (^o)	61.208142	Long. (^o)	25.113609	Alt. (m)		Depth (m)	5.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009598	Metagenome / Metatranscriptome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0239581_10246282	F009598	GAGG	MLDKQNVVVINLASETGHRGIVEQVAHEVYVKMVDYLRLTQSKNTYNRFTDYHYLQIPVANSTEPVRGIDYIAPIVTPAIDYATAIITKCLMPDGGVNFEFGRFSEGDAMACSQATDMVKYFINDKNDAYAIIRDWAQDSLLHKNGIVMVMPIREPITM

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