NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0239581_1028931

Scaffold Ga0239581_1028931


Overview

Basic Information
Taxon OID3300029798 Open in IMG/M
Scaffold IDGa0239581_1028931 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Alinen Mustajarvi, Finland - AM11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUppsala University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1390
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Alinen Mustajarvi, Finland

Source Dataset Sampling Location
Location NameFinland: Alinen Mustajarvi in Hameenlinna
CoordinatesLat. (o)61.208142Long. (o)25.113609Alt. (m)Depth (m)5.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000926Metagenome / Metatranscriptome832Y
F001490Metagenome / Metatranscriptome685Y

Sequences

Protein IDFamilyRBSSequence
Ga0239581_10289311F000926GAGLIAQFEAQPPTGVAVQQLEVLVRTAVFQPANALVGYLLQAAADRIDAGYQPRPGQVRKGRETLQVQGLFGTFALTRDYYYHGGKQQGHSPADAALGLEVSDTPALARLIGLAGSAAASYQQAETFLAEIGGLAVAARQIQR
Ga0239581_10289312F001490N/AMNHSTTPQTLLQQIAKIQQMEPGKLCVIRHGPQGPYYNLQCREQGRTVTRYVPSDQVPVVATHTANYQQFQTLVAQYAQQVIAQTRADRTAAAKKKSRRLTSTWHKHKKSSS
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