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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029817 Open in IMG/M |
| Scaffold ID | Ga0247275_1021362 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Institute of Technology |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2047 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota, Marcell Experimental Forest | |||||||
| Coordinates | Lat. (o) | 47.5062 | Long. (o) | -93.45426667 | Alt. (m) | Depth (m) | 25 to 50 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002181 | Metagenome / Metatranscriptome | 586 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247275_10213621 | F002181 | N/A | LRKTNEELKNLQNSVKTGMINVKVLMDFRTATERARQASAAVQQWLDAQGKGGDPYKLMEQVVKQRVEMASQLIKDVTVDLESLDVDLDTPGLPALNEAVRKLAERLEKLFPH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |