NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245026_100042

Scaffold Ga0245026_100042


Overview

Basic Information
Taxon OID3300029820 Open in IMG/M
Scaffold IDGa0245026_100042 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai, China - P104V6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)202337
Total Scaffold Genes175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)171 (97.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095494Metagenome105N
F096287Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0245026_100042121F095494GGAGGVSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEATRTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSHPLLWYENWTTADEQQHFVTSHEIAIEMLETAVADPMLPTDDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLLFSGRTSQEEVTSLLRTIIREMGE
Ga0245026_10004263F096287AGGAGMQRIQKRRAGQRQTQNALIGLLSAVSMTRVGLTQLLPLCGSAAWWLSAACMLPGLCVYGALRLLLRRAHTRTLTDCARKLLGNFGGILIMLTLTLPLLLDGAASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLFAAAIIAINALLDAHPDGIVPLLGEGVPPLLSGIRSAWGMSWMLLLLLEFPAEEGARRTPAMLAGLLPCPVILLLLSLTIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCQLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYVLIGLLTLTQLFDISRLWRVLTALTAWSLAPGVLLLLVLTIARLCRRGKV
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