NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245026_100143

Scaffold Ga0245026_100143


Overview

Basic Information
Taxon OID3300029820 Open in IMG/M
Scaffold IDGa0245026_100143 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai, China - P104V6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)120548
Total Scaffold Genes106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)101 (95.28%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042910Metagenome157N
F059982Metagenome133N
F101191Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0245026_10014321F059982GGAGGMRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDKNPAAALPILMQDFDPKTSETMDFDSQPGFCILGGVVNDAFDDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVAEDAAATASPEV
Ga0245026_10014393F042910AGGCGGLPDRLYCALNGTTLHDLDARIHLLDVEELAPTVRTVTANRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
Ga0245026_10014395F101191AGGAGGLLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDAKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLVIELRNPLCVSGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA

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