Scaffold Ga0134854_1041002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134854_1041002

Scaffold Ga0134854_1041002

Overview

Basic Information
Taxon OID	3300029822 Open in IMG/M
Scaffold ID	Ga0134854_1041002 Open in IMG/M
Source Dataset Name	Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-3-30-T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chongqing University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1124
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location
Location Name	China: Chengdu
Coordinates	Lat. (^o)	30.65	Long. (^o)	104.06	Alt. (m)		Depth (m)	.01
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103105	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134854_10410023	F103105	AGCAGG	MIPEPYSSWPVVMSRNKAAKLLGIDRKTLAKNKELLDRCSEKIGDKPKVIRDRLLRELKI

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