NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134835_1028140

Scaffold Ga0134835_1028140


Overview

Basic Information
Taxon OID3300029825 Open in IMG/M
Scaffold IDGa0134835_1028140 Open in IMG/M
Source Dataset NameLiquor fermentation pit mud microbial communities from Luzhou, China - Meta-1-2-440-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChongqing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1973
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location
Location NameChina: Luzhou
CoordinatesLat. (o)28.88Long. (o)105.45Alt. (m)Depth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072352Metagenome / Metatranscriptome121Y
F080011Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0134835_10281403F072352GGAGGMSSKTGGPFAAVKHARTVHHLPGCPNGCGEMLALDDGWQCPVCNWYRGYRKGERHP
Ga0134835_10281405F080011GAGGMTWDDLEELRDRLTTILEYERADDGFCPIEEDYYIQYRQAARRAVADIDPDHSHDPDHYQTLQEIYDAVGEIYDIRSAKLRMCVKDRVVFRRDVDRPENLTEEEQERYDMAISLGGHNAE

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