NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245317_100004

Scaffold Ga0245317_100004


Overview

Basic Information
Taxon OID3300029872 Open in IMG/M
Scaffold IDGa0245317_100004 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37584
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550015
Total Scaffold Genes493 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)455 (92.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073573Metagenome120N
F096287Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0245317_100004383F096287AGGAGMQRIQKRRAGQRQTQNALIGLLSAVSMTRIGLTQLLPLCGSAAWWLSAACMLPGLCVYGAFRLLLRRTHTRTLTDCARKLLGNFGGILIMLALILPLLLDGAASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLVAATIIAINALLDAHPDGIVPLLGEGVPPLLSGIRSAWGMSWVLLLLLEFPVEEGTRRTPAMFVALLPCPVILFLLSLAIPPELTVPGRSLASGLVLPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTAFTAWSLVPGVLLLLVLTIARLCRREKA
Ga0245317_10000493F073573AGGAGGMPTIVSFYQRFPNEAPPLNLSAFDSTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVHIRPRGGEIEALPRVMLSVYSEGVLFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESAITYQPAFLWYKDYCTKA
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