NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245255_100104

Scaffold Ga0245255_100104


Overview

Basic Information
Taxon OID3300029880 Open in IMG/M
Scaffold IDGa0245255_100104 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37202R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)153572
Total Scaffold Genes203 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (42.36%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042095Metagenome159N
F050794Metagenome145N
F057001Metagenome137Y
F076653Metagenome118N
F077313Metagenome117N
F083452Metagenome113N
F089591Metagenome109N
F098313Metagenome104N
F102167Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0245255_100104106F057001AGGMPIQVPRAGANLMTSKDINKVQSEVKKASEKTLTGAVKAWCQLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNSTFCSYKEVEREYYDKNDQDKNKKLKMNEIEDIAILGSSHKRFGYNEPIEFDFGIYYETFNGTDKRIVKCAVPIKRYTFSLIAKCITYYLTHPKNDR
Ga0245255_100104112F083452N/AMSGRIKIKPKNKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGMVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
Ga0245255_100104115F102167N/AMDINQIKKYLPAGWDVIDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKITESHNLTTFSFHDKDMGGLRRLVSNAIMAVGLRNNPMTGDGNTAIK
Ga0245255_100104144F089591GGAGGMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNEVSHIDDPESTSFGLPDDYLWFSNIKGSFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEEGFRTEEVRMTYYRNPVRVDLVGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFK
Ga0245255_100104150F042095N/AMAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIRHKKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPSDMWNYFDINTLPFFEVDKINPNITNFDFLNDWVSGERRTGWNDDNMSGRGLEHLTGFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTRNQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0245255_100104190F077313N/AMSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDSNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGMERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNAQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0245255_100104193F050794N/AMAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVDVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDVLLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMRDLLNELKGNIDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDGYDYALYMTEECDC
Ga0245255_10010438F076653AGGMTLSDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFERMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0245255_1001046F098313N/AMREQEFDFVVYPLKLIITVGLDYETLCNRFENMEPDHKGEWGDKDDMDKEASFANLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD
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