Scaffold Ga0246001_1023576

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0246001_1023576

Scaffold Ga0246001_1023576

Overview

Basic Information
Taxon OID	3300029889 Open in IMG/M
Scaffold ID	Ga0246001_1023576 Open in IMG/M
Source Dataset Name	Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1729
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat → Peat Microbial Communities From Marcell Experimental Forest Bog In Minnesota, Usa

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.506	Long. (^o)	-93.454	Alt. (m)		Depth (m)	.3 to .4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060564	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0246001_10235763	F060564	N/A	AQVLLVPHPFLRLEGMLKPMATFNVTPEQLVIFHECLGSKVCIRIFQVFLANKSLNVSAISRKVGCNNDRCIEHLKKLAKLGIVQEEFYAGRHSFALKKGDFTDLMRQAITLMDKDEKNTPNIVHRGDSQ

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