NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0246001_1067396

Scaffold Ga0246001_1067396


Overview

Basic Information
Taxon OID3300029889 Open in IMG/M
Scaffold IDGa0246001_1067396 Open in IMG/M
Source Dataset NamePeat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)714
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat → Peat Microbial Communities From Marcell Experimental Forest Bog In Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.506Long. (o)-93.454Alt. (m)Depth (m).3 to .4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011771Metagenome / Metatranscriptome287Y
F014867Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0246001_10673961F011771N/AKASGPARFGGLDQLDWLMIVISVLLGTVARRYHLLALPDRFLEWVLPFLLMVAGYRARRKLTELIESRRAQAKRPTSK
Ga0246001_10673962F014867GAGGMRLLFPSSYDRADVLMSAGCCTFVSAALIVVIPRLGILLLELLLGLFFIGCAVVARKRLRRQARAKNGSDKAKDARTRRLDKYDFFMILAVMLVQTNAAGSLRKAGLSEGAVGILPLFLFAAGILLKPRAVEFMEARRKNKQDGRGSTNVASLD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.