Scaffold Ga0247046_1005237

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247046_1005237

Scaffold Ga0247046_1005237

Overview

Basic Information
Taxon OID	3300029898 Open in IMG/M
Scaffold ID	Ga0247046_1005237 Open in IMG/M
Source Dataset Name	Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A1b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DMAC, Technical University of Denmark
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4912
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location
Location Name	Greenland: Tasiilaq
Coordinates	Lat. (^o)	65.41	Long. (^o)	-38.51	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003908	Metagenome / Metatranscriptome	462	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247046_10052374	F003908	AGGA	VKVTTSFAAAVLALGACSSPAKQPMTLEQMIAADPLPLAKGAKWTYNVTVKRYDPDSDKESTKTLTWTTEVLDAHEVNGVTAFRVKGWPTDLASDLESAAPVATERTLLRSGNNFLFGATTEPTLDGAEGWFTWPVIDGQKICPKTETVYCWQVTAVDTGYALSFYTGPDEQTFDIEPGTGVSRFHYAHHGTTNEVEAKLTSFTKGR

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