NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247047_1025856

Scaffold Ga0247047_1025856


Overview

Basic Information
Taxon OID3300029899 Open in IMG/M
Scaffold IDGa0247047_1025856 Open in IMG/M
Source Dataset NameCryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A2a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDMAC, Technical University of Denmark
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1783
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location
Location NameGreenland: Tasiilaq
CoordinatesLat. (o)65.41Long. (o)-38.51Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083559Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0247047_10258562F083559N/AAKRVMDVIPHTVREFGVEARKPGKAWEAAFNGPIQSWTDPKTGGLTYGVTVRLSRLKDPVTRELYSTNILFYLPEDQMQGMHNVYEMAQRFPFTRIRGPRTLAPPCPPRVGNLSYDPNPEGVIMEDLRLTPATLPDGRPGFFVTGQGYRGKVVFSDGRVIHDVGVYGGYLDPQEHPGQLELQHLFGGVKFTDPPTGAEEDRLLTEIGDGVWVKGILGMESDAPHVESYKNSVKLPSLDGHKTLIGARSMSETKQIAFFESLSEDGLSGFRLAGVIDGLHRALGIEVWDRVHRVGLGSNFVECSELGGYIGLIHVVLEKNNPDFPETLDPAHPGINEQYEGWVVWLAFDENGAPIIKACVRAITPDDVPLSYEGAGELFDTKRVAFPMSLYRVGECLSVGYGWGDRALFQADFDYQTVTNQLSLHNRN
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