NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247271_100105

Scaffold Ga0247271_100105


Overview

Basic Information
Taxon OID3300029903 Open in IMG/M
Scaffold IDGa0247271_100105 Open in IMG/M
Source Dataset NameSoil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21475
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota, Marcell Experimental Forest
CoordinatesLat. (o)47.50505Long. (o)-93.48901667Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018275Metagenome / Metatranscriptome236Y
F052058Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0247271_10010514F018275AGGMPISFEPTHDGNEDSLRFQPMERLKVYLFGATVLFASFGMGEAVYRVLFSEFDGATDRIPIEALFGLVFAWLATKFVGDAYRNRKQRSARLNFXXXXL
Ga0247271_10010515F052058N/AMPTGIESRGALGLTSXXXICDRSRQIRGALEAITPLAHPVKNQQSIRVIREEVDKIEWALKEILPR

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