NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247271_100296

Scaffold Ga0247271_100296


Overview

Basic Information
Taxon OID3300029903 Open in IMG/M
Scaffold IDGa0247271_100296 Open in IMG/M
Source Dataset NameSoil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14246
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota, Marcell Experimental Forest
CoordinatesLat. (o)47.50505Long. (o)-93.48901667Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034635Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0247271_1002965F034635AGGAGLTAVRWFILALLLAGRLAAQNLGPQNLGPQNMDRDKVTSDELPAAPMPMTTAASQPKPEPRPEKVFDKKFFAVMGSLAAAESLRVTTRKLVLEHEYAAGAPWVASVPSNRPLIARDLALYSGEFLVAYELKKSHSWLPGDRILRKLWWAYPAAMTTIHIKNAVGNIRTQGPGGCTSMECATQMQ
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