Scaffold Ga0247271_101811

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0247271_101811

Scaffold Ga0247271_101811

Overview

Basic Information
Taxon OID	3300029903 Open in IMG/M
Scaffold ID	Ga0247271_101811 Open in IMG/M
Source Dataset Name	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5147
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location
Location Name	USA: Minnesota, Marcell Experimental Forest
Coordinates	Lat. (^o)	47.50505	Long. (^o)	-93.48901667	Alt. (m)		Depth (m)	0 to 10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027340	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247271_1018111	F027340	AGGAGG	MSKSAVLFTIATILVVGVVTLGVSKPTPSLAGSWEVDTRHSDAKLITDATTDYGKTKINVALGYARIGGVFKIDDADPAKSSVDFRFYPAMSMAPSIDERGKFLKEFLQNPANQTLVCFHSKRVVRMPDGRLQATGELAVTRVDRNVEAEPTEAYSGPVYGPPIIHRVWHEATFVFDLQDANGSGQKEATLQASGSTSMFREDFPQLVKTVVNTYWPTVVQEQNCQYPDASEAYSGAQCTGTYLATAGLPAAPYEGGGEGVGVQQNFSAVVGNHLNIL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.