NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311341_10089320

Scaffold Ga0311341_10089320


Overview

Basic Information
Taxon OID3300029908 Open in IMG/M
Scaffold IDGa0311341_10089320 Open in IMG/M
Source Dataset NameII_Bog_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2129
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038954Metagenome164N
F085039Metagenome111N
F093143Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0311341_100893201F085039GAGMSMFEIVPPEPVVVSDKLAEKILQFIGSFMHADCSSMAEALFAAVPELKLVDNALTTMETVYNDCLLTQQGISDLDGKNLAATMDNIQESFQALTGHECRPCDFNMDPGAGREPEDGEDEDEDA
Ga0311341_100893205F093143GGGGGMSASRATIAAGYISMAEQELEQDLASTMKTVLDREPNIAHRALVFVLQDECLVTFEKADSYIKSHREV
Ga0311341_100893206F038954GGAGGMGSFVFIVLVLGFIWIVRGLAKAEQRRQLARQAGFTEEEINRIDQKNLAIQTFLAGLIVGPATFIGMIFLTCLLVWVLFPVGLLATLALWSLYLKWLRSFFRGN
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