NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311369_10037654

Scaffold Ga0311369_10037654


Overview

Basic Information
Taxon OID3300029910 Open in IMG/M
Scaffold IDGa0311369_10037654 Open in IMG/M
Source Dataset NameIII_Palsa_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5453
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008511Metagenome / Metatranscriptome332Y
F073232Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0311369_100376542F073232GGAGMPGWNSLKWLLWISLYLIPVVFLPWAISRTWVYQHGKELHLKPQQLFQRGELGLPSLVLACSVIWNLLQSQLTPHTIALGSVIMGLSGIMAVSVWVETYCRQSSGGDQRPERAWRDSRNLALLVFSMAAVLEILLDRFAKVVGQ
Ga0311369_100376543F008511AGGTGGMSAPAPALAAPAKTPRKIAVVRMADASGAVAILSLVFGLLLVFFPESFPRMIVRSWQHAQLMPIMMVFTFLLDTCLYLRVAYLQSAKPRPAAAACLGSLPILVVGGLSILLRSALSYTLSAGLPNLQARLAEEILAHTYLGLVSAVFLPFLAIRLLQQLKAANA
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