NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311369_11421205

Scaffold Ga0311369_11421205


Overview

Basic Information
Taxon OID3300029910 Open in IMG/M
Scaffold IDGa0311369_11421205 Open in IMG/M
Source Dataset NameIII_Palsa_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002094Metagenome / Metatranscriptome594Y
F028631Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0311369_114212051F002094N/ALIPGDRVEGLGNFGKPTGEFGTIKQANEDDAVVKWDDDGRVRVHQPSLKKV
Ga0311369_114212052F028631AGGAGGMRQKLVLWFLLVLTGFLIGFILQYSRLQRVQQELSASTKQLGSCKSSQQLAQLRDTTTMMYLEVVQKNYGKAGEYSGEVFDQAQQIASSTEDP

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