NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311361_10172069

Scaffold Ga0311361_10172069


Overview

Basic Information
Taxon OID3300029911 Open in IMG/M
Scaffold IDGa0311361_10172069 Open in IMG/M
Source Dataset NameIII_Bog_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2759
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001352Metagenome / Metatranscriptome717Y
F016200Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0311361_101720693F016200GGAVRHRPQVQTAAVVVLDLRGRATVRGENLPETSQPPIGVPRNARTLNLELPIGSNEGAYDVAVFNPSGAELFRTSATAKLENHIVVLRADVDLAGVSPGSYFLGVRQPGVEWTRFPIRLL
Ga0311361_101720694F001352GAGGMSSRELSPEWVLSSFIPPIAAPQHEISELIVVARRLWPSVQGHAYREQPGKSSDEALAFASEVWEGVLRSVAKTIQRSNGKNWRIKNMEAYLFGAFHHRFNRALKKERRRLQTIQHLASSLDLERLRQAHDSKAVRDLEQSIQLKEAVRNMDEWTRKVWAARQYGYSWKEIATQLGLTEPQVKLRFRYAIGKLRARLGGAR
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