NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311361_10555198

Scaffold Ga0311361_10555198


Overview

Basic Information
Taxon OID3300029911 Open in IMG/M
Scaffold IDGa0311361_10555198 Open in IMG/M
Source Dataset NameIII_Bog_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1116
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F036729Metagenome / Metatranscriptome169N
F057062Metagenome / Metatranscriptome136Y
F085625Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0311361_105551981F085625N/AGAPIPVKITRCEPGIAEVTAGGARIGVMALELPPANADMKKAQPTVLQILFPVDRSGNLTATLVL
Ga0311361_105551982F001473GGAGMETRYQTVGEMYERLQSMMRQRGDTGFRLAVRDAVLQPRNLFEPANKRRPKPVLAIVISVVLALAFVFSYFSFHHGA
Ga0311361_105551983F057062N/AMAMLEREEIRSLVPDSAGLPGAADYACTGLQSETRLQDELLSDVISSACYWSTVILLALAGAGLSYWRLRHPGPAAAVTDPFGISTPPWMMLSLPPIGVVASLGHAAWCAVRGKRAWRMLMTAASLVAVMSATTVLEKHLTVL
Ga0311361_105551984F036729GAGGMIHQSENPRHEMTSGEAGVVGAVLGFGLVALALYLAIARYHVRKEQLVEAGLYVFIVT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.