NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247050_1006148

Scaffold Ga0247050_1006148


Overview

Basic Information
Taxon OID3300029912 Open in IMG/M
Scaffold IDGa0247050_1006148 Open in IMG/M
Source Dataset NameCryconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-A3a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDMAC, Technical University of Denmark
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4707
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location
Location NameGreenland: Kangerlussuaq
CoordinatesLat. (o)67.09Long. (o)-50.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083559Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0247050_10061485F083559AGAAGGVNDCAALDSPKSPSNYSSSKPSLIDLSVLPHTVHEFGVEARKVGKAWEAAFNGPIQSWADAETGQTTYGVTVRLSRLKDPVTHELYSTNILFYLPEDAMLGMHNVYDMARRFPFTRIRGPRTPVPHCPPRIGNLWYDANPEGVIMEDVRQSPATLPDGRPGFFVTGQGYRGKVMLPDGLFIHDVGVYGGYLDPQERPSQLELQHLFGGIEFVPGKTGTQEDLFLTELGENVWVKGIVGNAVDELHVESYKNSVRLPSARTDKVLIGARSMSETKLLPYFESADPSGLRGYGLCGFVDGLPPAIGAEVWEHVHRVGLGSNFIPSPELGGHIGLIHVVLERNNPAYPETHDPAYPDIEEQYEGWVVWLDFDENGAPHVKACLRAITPDDVPRCYQGAGELFDTKRVAFPISLYRVGESLRVGYGWGDRALFQAEFDYQTVVRRLAA
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