NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311362_10135107

Scaffold Ga0311362_10135107


Overview

Basic Information
Taxon OID3300029913 Open in IMG/M
Scaffold IDGa0311362_10135107 Open in IMG/M
Source Dataset NameIII_Bog_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3078
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003942Metagenome460N

Sequences

Protein IDFamilyRBSSequence
Ga0311362_101351073F003389GGAMQITVWSVAADDDNGTYASVHETELAAYRRLIELTVDNDDTDQVAKAEAFIEAEDLDGLDEWIHAEVIEPLNTYSVDQHKLDVLAASVKAPAEENKHITRRELASVLHGLRLIQEQWEPQMRGCTSIGLHDPLELSEPNSCDHFCDEEDSPLGPGEIDDLCERLNMGFCN
Ga0311362_101351074F003942N/AIHRYEDVELIEVHSEYLECSFLVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHAIYADHLSAMLYGTGLNPARS
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