NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311362_10694316

Scaffold Ga0311362_10694316


Overview

Basic Information
Taxon OID3300029913 Open in IMG/M
Scaffold IDGa0311362_10694316 Open in IMG/M
Source Dataset NameIII_Bog_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)873
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003186Metagenome / Metatranscriptome502N
F023143Metagenome / Metatranscriptome211Y
F103703Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0311362_106943161F103703N/ASVNPSDFSTPPAKGDWVTAWGTQYVVTTLRQPDAYGMTAVTLLKRT
Ga0311362_106943162F003186N/AVINPKTILGEWVAALRSCPDLVTAIGGNPENIWAFMEGLADHNNLRLAILQMLPGSILVAWNGTTPRRLTGGALHFAHHFSIYLRAPELNSTATYADLFWLVVSAIPAGAPSWSSLLHFQIDPDCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQNNPGGE
Ga0311362_106943163F023143AGGAGGMDWVFMESPTGEVKEVEATAASLTPLMVAGWRQVPAPAATGPKPAAPVEEKQ
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