Basic Information | |
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Taxon OID | 3300029916 Open in IMG/M |
Scaffold ID | Ga0302148_1008697 Open in IMG/M |
Source Dataset Name | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3058 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Abisko, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0477 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003942 | Metagenome | 460 | N |
F004301 | Metagenome / Metatranscriptome | 444 | Y |
F042119 | Metagenome | 158 | N |
Protein ID | Family | RBS | Sequence |
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Ga0302148_10086971 | F004301 | N/A | QFSLFDARSVTATVDMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQQASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ |
Ga0302148_10086973 | F042119 | GAG | METINREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYHDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVQFVASQDEDIPTPQVQLALF |
Ga0302148_10086974 | F003942 | GGAG | MLGHRLNPTIHRYEDVELIEVHSKYLECRFLVAKDEWETGKTLLNIFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIEIQRQAGHAIYADHLSAMLYGTGLNPAHS |
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