NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311363_10208796

Scaffold Ga0311363_10208796


Overview

Basic Information
Taxon OID3300029922 Open in IMG/M
Scaffold IDGa0311363_10208796 Open in IMG/M
Source Dataset NameIII_Fen_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2353
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006676Metagenome / Metatranscriptome367Y
F016049Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0311363_102087961F016049N/AIEDQQRSESDRSRTNPSLSVRLLFWSQEHMFGRARNGGWFDAIQFYAIRDSRSKRAEVYWSECVKTWRKAKPQKYPSLKQWLSDAAGCDPFTHLTPGARKAKASYGLVEPKRLTEAVTRYINWEALAYWARPALEAAPPLVHKVSRELVRRCRGFLEFNAKARKADHADFPQDWHRLMLWITDHFFQDAKTGGWMDAILSSARSHPRAIRTMEYWEQCDEIWESKLPDPYPSFGSWRKQADSYVISTPNELSQLAC
Ga0311363_102087962F006676GAGMEEGPDPKGKKANQSFSWLPQIDQVLVVGMKYGPRGTHEAVKKLRQLSPELSPAQIWHRMRHLREKDRGKRTGPIDWSEDAIETLREGYRIGGREKAVAIKTIKALYPGLSGYVVSRFARSQGWLEGERRTKKNDGRRPWTREEEQELFVRAGYDSVKEIARKLRRSEQSVRSRLKGRSISARVTDGWSLRRLQQTLHVSYRRLQHLIGNGFLKVRDPRVSVISLVEWCEKHRTTLQPGVEDKIAADLWKEETGHSWGRVAKLLGVTAAEVGRWVASGELKVVDPSVTDRAFEAFCRQHCAELNLQLMDPEVARWLIAEYGLKVVAPELTSVPFSQKQALVVRLCPKCKRDIRGNVYFRHVRSCRGAMSQRGDGRLGVNQQAS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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