NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311363_10482274

Scaffold Ga0311363_10482274


Overview

Basic Information
Taxon OID3300029922 Open in IMG/M
Scaffold IDGa0311363_10482274 Open in IMG/M
Source Dataset NameIII_Fen_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1272
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003942Metagenome460N
F022571Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0311363_104822742F003942GGAGMLGRRLNPTIHRYEDVELIDVHSEYLECRFLVAKDEWETGKTLLNIFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIEIQRQAGHALYANHLSAMLYGTGPNPARS
Ga0311363_104822743F022571GGAMEITVWSVAADDDNGTYASVHGTELAAYLRLIELTVDSDDKDQIAKAEAFIDAEDFDGLDEWIHAEVIEPLSTYSVDQHKLDVPAASDPTPADGNRHITRR
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