NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311363_10927800

Scaffold Ga0311363_10927800


Overview

Basic Information
Taxon OID3300029922 Open in IMG/M
Scaffold IDGa0311363_10927800 Open in IMG/M
Source Dataset NameIII_Fen_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)777
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F069486Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0311363_109278001F002261N/AHEDRCGGADYAEWCERAGRSVGRSCRPRKAEPVLLIMSDWATIDAAANAVMQDTFGEPVVYQPVQSGAAVGSPLTITAIRHAREREESGATASFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLSLLQRS
Ga0311363_109278002F069486N/AVINPKTILGEWVTALQSCPDLVTAIGGDGDNIRAFMEGLADDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPELNSTAAYADLFWLLVSAIPTGAPSWSS
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