NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000011

Scaffold Ga0119944_1000011


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000011 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29510
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (43.94%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000744Metagenome / Metatranscriptome909Y
F001968Metagenome / Metatranscriptome610Y
F004314Metagenome / Metatranscriptome444Y
F015704Metagenome / Metatranscriptome252Y
F021760Metagenome / Metatranscriptome217Y
F048268Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_100001127F004314N/AMYDDYDLDYTYCNDYSLDEDSYHEHGTYDLDEDYARDTQDYDSLAYRHYA
Ga0119944_100001130F021760N/AMCGPAFEYTREDFLNDASPEEWDAWESEAARLELPLDYYLAEFV
Ga0119944_100001133F001968GAGGMFDEMWQEIQDMPGEIFDLDIPELREDNKFDVNEYLNANYDY
Ga0119944_10000114F048268N/AMQLSTQSVSKIADALKPAVLEYIYADDGFTEYMQTAVIEGIRDTMGEMDDDLLFEIGMLIFDRIELK
Ga0119944_100001152F015704N/AMTDPCFPEQIAAITNPDNGTIYWIEAAYAAKLHGLWDDFRTDYGTTAAFGGVDAGEFLVWLGY
Ga0119944_10000118F000744GGAGMIETSVNLNVHEIGVILSALQELNLREENRIAREYGSVPALYNKLYSLWEMMDTSETGLRYDVVPSF
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