NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000118

Scaffold Ga0119944_1000118


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000118 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12751
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (24.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F001806Metagenome / Metatranscriptome631Y
F001807Metagenome / Metatranscriptome631Y
F003601Metagenome / Metatranscriptome477Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_100011816F001165N/AMPDDLRIPDSVDMQRLASMQLVAKMKESADKYGVGFIGGFIAPNGEKFMMSNMSDEDTQMLLPEDFR
Ga0119944_100011820F001807N/AMSILAIEDTFIDGSNVTVTAVVEDMRLLYRASRFEPEEWAPALCTATFQLDEGEQIPTDEDGFCSYLDQLDLDWQIVDTSDCCVE
Ga0119944_100011822F003601AGGMTHNYTDDQLLAMAMANIGEFIHDNSPHYVLIEDDPRNEEDYDTWEYGTEPLPHDHTWHSASIDVEVSPSDADVTE
Ga0119944_10001185F001806N/AMDAGTRQKRVEALEAIKNKAMEMAVGGEDSLAVRDFVKDAKMSLAYELPDEEAFNKAARATLAYKRKKGQ
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