NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000367

Scaffold Ga0119944_1000367


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000367 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7863
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028157Metagenome192Y
F033428Metagenome177Y
F041769Metagenome159Y
F051124Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_100036712F041769AGGAGMTYDIDALRQMNEEAQLRIAELSTALAHVTEQRDNLEDSLTAAIREVDAYKQQIASLTTTIERLRLHIQQGVEL
Ga0119944_100036715F033428AGAAGGVSAIEGQLVAAEDVAILKQLFNLISEKCRTEIREISDEAFGAISMNPPTERRVGIARILLEVAEQEGHIDKDLVRSICTLRTGKHYPSAGFALADLSWIDAERVWSTFQDIYAERVELEYIPESNHYTIKEHHHVR
Ga0119944_10003677F051124N/AMTKKTDPLELYINSVGAGWCVRYVMIAIVEDEQGDQQFLVQASPNQTAAETIGLCEAVSHIQKAKIARAWIREEDETDDE
Ga0119944_10003679F028157AGGAVSIADPKFATVLADSDGHSRWVAHIDATDVMSAYRQGGVHLLVTLDPEGNITVAFKPGRHWEATWSPPISLDRK
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