Scaffold Ga0119944

Basic Information
Taxon OID	3300029930 Open in IMG/M
Scaffold ID	Ga0119944_1000817 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029930 Open in IMG/M

Scaffold ID

Ga0119944_1000817 Open in IMG/M

Source Dataset Name

Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hong Kong

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5630
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (56.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5630

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (56.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)	.5
Location on Map

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Source Dataset Sampling Location

Location Name

China: Pearl River Delta area

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001125	Metagenome / Metatranscriptome	769	Y
F005177	Metagenome / Metatranscriptome	409	Y
F007470	Metagenome / Metatranscriptome	350	Y
F008305	Metagenome / Metatranscriptome	335	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100081711	F001125	AGGCGG	MGDRANFGFRQSNENVVFLYGHWAGHNMLENLANAVATARPRWTDESYATRIAISQLVGEDWNQELGWGLTVNELADNEHKVPVIDWNNQTFTLYQEDLKTVVFSMSLIDFCTKYSQLVM
Ga0119944_100081713	F000868	GGAG	MAESFLENENQMVIDAEMQTIADQLLDDWIQSNLDEGQFWSDYQIASMCDSNYLKGRFNQFYDLKPEDQYYLEWDEEK
Ga0119944_100081714	F008305	AGGAG	MLGYTYKEIQEFGIPLENAISSATDPQVKQGLLTIWDFFEGLLAEGYVDEPVN
Ga0119944_10008173	F005177	AGGA	MKNRYRVEIYDENKANDLTIYSEQGVDKEYLTELVFSNLRKFDGNIRAYVYDNLKKKKTTALILNREFLPPKTELTKLLG
Ga0119944_10008178	F000311	GAG	MYFELTAPDRLSLEMAYWEAQVTGLDPQFMPPLTFNVGTGSIEKVSRIRDKFNLTESYVSDYEPTGYTRR
Ga0119944_10008179	F007470	N/A	MFLTMNRLDTQGDNMDYQDGFEDGVKFTREVIIANIRLWAETSDDGQAYDDIADRIEFGTVDYDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119944_1000817

Overview

Ecosystem & Geography

Associated Families

Sequences