NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1001017

Scaffold Ga0119944_1001017


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1001017 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5035
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F006744Metagenome / Metatranscriptome365Y
F007363Metagenome / Metatranscriptome352Y
F013526Metagenome / Metatranscriptome270Y
F017484Metagenome / Metatranscriptome240Y
F057310Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_100101712F013526AGGAGLTKKNVLISFITEAETDLDAIFALNKVMYKLPESDVVKFDAFEILDVVE
Ga0119944_100101713F017484AGGMTIEIFRLNENGAGWVSLKNATDSELLDLELAVLTKAEVKMLCFKCHVEIPRGNVCVNHKDVKGAIYLD
Ga0119944_100101715F057310N/AMKITYSVWQGSIIKGSKFTATNMKDVAKVIDDLNSTGVKPKFEAFISLVEQDDK
Ga0119944_10010173F000808GGAGGMEKEYNYALTISYDGKLVSTYRTSDMLEAVDSWNKCVDFGDAKEYATYNLSDPFGKMFTKHFYRNGEVNGK
Ga0119944_10010175F007363AGGAMKSYSIVDLLVDQYYAPTSLRRRFNGGIINYAEKRENVYLSEGYEAYSIRYRPTGSLKDEWATVAVKVSD
Ga0119944_10010179F006744AGGMKLDEFKALIEAQRKASREEALSVLTAKMSNDNQRKEN
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