Scaffold Ga0119944_1001720

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119944_1001720

Scaffold Ga0119944_1001720

Overview

Basic Information
Taxon OID	3300029930 Open in IMG/M
Scaffold ID	Ga0119944_1001720 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3847
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F018349	Metagenome / Metatranscriptome	235	Y
F047643	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10017202	F000450	AGGA	MGDRANFGFVQPNGNTIVLYGHWAGHQMLGKLADAVISARPRWNDPAYATRIAISQLIGDQWNQETGWGLHVNEISDNEHKIAIVDWDQQTFSLHEEDTFANTDNKVRGMKNEAIFTMDLSAFCEKYAVDQLLTV
Ga0119944_10017204	F018349	AGGAG	MDYRDGFEDGVKFTREVIINNIRAWASDCIDGAEGQIMDDIADKIEFGTLNNDL
Ga0119944_10017205	F047643	AGGA	MYYQLRAPNGAALKAAYWEAEFSGLDPYYLESDVFELGTGNIEKVSALISKYKLDILVETDYQPTGYTRR

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