NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1003470

Scaffold Ga0119944_1003470


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1003470 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2633
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016959Metagenome / Metatranscriptome243N
F040095Metagenome / Metatranscriptome162Y
F045698Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10034705F040095N/AMRLYSKKNKEDLFDIFEIHFSLPIIKWGTQPGNEWGNDYPVKSVDIQFNTNFIYRKDDTWWIFQLTLLGFGFSLIKQNGY
Ga0119944_10034706F045698N/AMNLPEKQLDVIDLTKLIREVHYKLQLDYQALMGKTTALEAENAELKAKLEVVADKLQLL
Ga0119944_10034708F016959N/AMNVIAQSVEAIMNMNKPQWPTLEGRLNHPLTDELTALQQLKQVLPLSKQAQELYDKLSKESIQETRSDAGTTRNEGGISKNV
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