NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1005296

Scaffold Ga0119944_1005296


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1005296 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2079
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F022857Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10052962F022857AGTAGGMEAVTVPKITVSFAVDIEVNYDSFSGKTRQDIAIALQDEIDDLLYEASSDVASVYTSITAIDSND
Ga0119944_10052966F001018N/AKLNKLNVLQLYQHYAALEQSLPLLTSESQDLAKAELESCSQLRSEKVDRIYYAIAANEDALERIKKEGELITQAKRHHEGQVKQLKGLLSWLRRSLPLDTNKITGRNYQFTLSKKRELTVEISSDPELWSSDEKENYCIVEECTTTKQVVLRSFSGSVISESTEPTTKTKILPNIDALRNAYQTGQQLPSGVKVTQEYSIRSKRIYSEPRMELATSEYPAELLPEA
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