NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1019740

Scaffold Ga0119944_1019740


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1019740 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)924
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F012862Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10197401F012862N/ALNKISEEGLSFRVNYEFLPSRSMVPAPTGRRRHMFANKASIMEEGKPLVIRPKNAERLVFEVDGETVFMPKGKSVTVRRPGGSASTNQFTLAHSRFFSGRLVNESIKRSGFQKIFNSSITKALSVPSNIKKVQYSFSPNLIRSQADAALTASFGGAL
Ga0119944_10197402F000258GGAGGMTANYKLDAMLELRKYLWKELYTRNIFDEEEYWSDNLNENIIPIIPVQQAAEMNQFLSGKDHIVYDKIGVSYDTLWLICNEQILFTVYSTDVSKINEVRNFMIDEFRRMDESARDVNLSANFNSQKFKFHSIHVDDMSPTEPSQEMQGFYS
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