NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119911_100310

Scaffold Ga0119911_100310


Overview

Basic Information
Taxon OID3300029931 Open in IMG/M
Scaffold IDGa0119911_100310 Open in IMG/M
Source Dataset NameActivated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V90308
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCalifornia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5422
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Activated Sludge → Activated Sludge Bacterial And Viral Communities From Ebpr Bioreactors In Australia

Source Dataset Sampling Location
Location NameAustralia: Queensland
CoordinatesLat. (o)-27.49999Long. (o)153.01209Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009328Metagenome / Metatranscriptome319Y
F091594Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0119911_1003106F009328GGAMKKEGYWCVVCGRFLAADNAGVIVHDDVPHPETMTFNEEDVQQ
Ga0119911_1003107F091594GAGGMSEQAIKTFCLGNGEIGCDGCEQEKNWQTLNQMPNALRLAMQDTARRIDDTECILRGRLWRT

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