Scaffold Ga0119911_102762

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119911_102762

Scaffold Ga0119911_102762

Overview

Basic Information
Taxon OID	3300029931 Open in IMG/M
Scaffold ID	Ga0119911_102762 Open in IMG/M
Source Dataset Name	Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V90308
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	California Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	892
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Activated Sludge → Activated Sludge Bacterial And Viral Communities From Ebpr Bioreactors In Australia

Source Dataset Sampling Location
Location Name	Australia: Queensland
Coordinates	Lat. (^o)	-27.49999	Long. (^o)	153.01209	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100051	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119911_1027621	F100051	N/A	RLICAVFGHRYVVERVLNHGARKVGCTRCGKHWGMHDGTRSFVPWDGELEALYAPGGILAQASGDVPPNAQITGG

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