NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119945_1012664

Scaffold Ga0119945_1012664


Overview

Basic Information
Taxon OID3300029933 Open in IMG/M
Scaffold IDGa0119945_1012664 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002488Metagenome / Metatranscriptome554N
F075860Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0119945_10126641F075860N/AMSVTLIAYPTANFIDDLTAWNNFNTRATADGADAVEAACFDCLYSRFAPLNGMPELAYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNEKCFGFAYNIQSFVGGFTPNKKIRAAMWEDGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVIDAVGFTDVYSQGGGVLLAGWWQLGPSIYVKKMVDLIFTQAGY
Ga0119945_10126642F002488N/AMKNRKRANIEREVFGFNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELNGTLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL
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