NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311340_10210972

Scaffold Ga0311340_10210972


Overview

Basic Information
Taxon OID3300029943 Open in IMG/M
Scaffold IDGa0311340_10210972 Open in IMG/M
Source Dataset NameI_Palsa_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1943
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000795Metagenome / Metatranscriptome887Y
F082957Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0311340_102109721F082957AGGAGGMPFFVLVMFVKVIYEAIRVFRKKNRAAKPEPLCVGCLHAHVQYAANTRRAISCAYGGAVRSMKLDVLYCTDYQARNVSARSRVVGFVREIVPAE
Ga0311340_1021097213F000795N/AMSTQTIELEGFEIELASELYCDRGGDHRELVDRARMDRRRLGHNIDESAVLCVRCMKAVSLKV

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