NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311340_10313750

Scaffold Ga0311340_10313750


Overview

Basic Information
Taxon OID3300029943 Open in IMG/M
Scaffold IDGa0311340_10313750 Open in IMG/M
Source Dataset NameI_Palsa_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1486
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017180Metagenome / Metatranscriptome242Y
F028872Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0311340_103137501F028872GAGGMPADRPHDVSSLTAAQLERAKRDLGISLALALPGSPVRVTIMTEMTAIDAELAERSGR
Ga0311340_103137502F017180GAGGMTDAESATVEPPKHPLHAMTTYELTYYRRRLENALAFLDKQDPVPAIRADLQTALDGLLAEQESRTRLADAR

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