NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311352_10154785

Scaffold Ga0311352_10154785


Overview

Basic Information
Taxon OID3300029944 Open in IMG/M
Scaffold IDGa0311352_10154785 Open in IMG/M
Source Dataset NameII_Palsa_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1981
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011101Metagenome / Metatranscriptome295Y
F085999Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0311352_101547851F011101N/ATNVPDNSVFDLSIYPADEDWGHALSPDGALLTGYVPDATDQTLLTFKSTRILRTGNGRLEVTGDLTLIRVARTVTATPTEAYSGPVYGDPVIHNVTREITFLFPSVSVVRFSETFTPAVQQTRGVLEVMGAARVDHEQFPELLSAIQDTNWPSVVRNEHCQAAYEGGGEGYSGAVCTGTLIAATHADNCQAAYEGGGEGYSGSVCTPAAGNQTTIVLDLKFLHKVPEPSLDAHSGKESSGDAAPGRLNGSSN
Ga0311352_101547852F085999AGGAMKTILGIRTVTCAVLAVGALLSTLGAVASDSDSYPSYLPAKVIAHLPLSGGARQMFSQQEGSRQFLYVQQSPQRGVTVIDITKAERPKVVSQVSLENLTMVSFGLAIFETPKNSATGDASLGDGNAEGPRGSGALESVRVLDVSDPAGPRTVRNFDGVTSILQDSARDLLYVANGAGIWIVSHQQVVHGHECNSSDALSDLPNCD
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