NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311371_11329291

Scaffold Ga0311371_11329291


Overview

Basic Information
Taxon OID3300029951 Open in IMG/M
Scaffold IDGa0311371_11329291 Open in IMG/M
Source Dataset NameIII_Palsa_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047830Metagenome149Y
F049109Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0311371_113292912F049109GGAVENESSNAERPLPPEQATAKAAILAECDRLTEAGVTFVAVHFHGAGDEGLNEDVRCYATEDYAYEE
Ga0311371_113292913F047830N/ALDDWATPEGWRRGLRPHAEEDSKPAERTTAGTDGHGDGHHNGNGASDHGASLVREIEQMEQALGKRMYRGLLKTLARLWNPKDIQDPAVQQKVLAHMQAAERGFRRLDAALDRVGPEPLQQILNSMRLQSLTQVDNLQALQQIVNALETTAQGNVPKQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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