NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311343_10465095

Scaffold Ga0311343_10465095


Overview

Basic Information
Taxon OID3300029953 Open in IMG/M
Scaffold IDGa0311343_10465095 Open in IMG/M
Source Dataset NameII_Bog_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F004392Metagenome / Metatranscriptome440N
F050789Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0311343_104650951F001528AGGAGMSEKNQIVVVLIVALFLGALIDRSTALKTVAGVVLLWTLQNQPVVFECIRKLFSFVQRRPSVREYRGGVTTFRAS
Ga0311343_104650952F004392AGGAMPVNGPETISDLKTSQPVAPEGRSVRAAKDARPAVARGAATRRRRDQQESSKTNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYRVTEFQTRADIGRSGEPILRKETLKKNNPAS
Ga0311343_104650953F050789N/AVGILPLILFAAGILLKPRAVQFIERRRKDRKAETHDGRSRLDAGEKQEIARKETVERCQ
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