NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311331_10235800

Scaffold Ga0311331_10235800


Overview

Basic Information
Taxon OID3300029954 Open in IMG/M
Scaffold IDGa0311331_10235800 Open in IMG/M
Source Dataset NameI_Bog_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2032
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F038518Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0311331_102358001F003389GGAMQITVWSVAADDNNGTYASVHETESAAYRRLIQLTVDSDNKDDVAKAEAFMEAEDFDGLDEWIHEEVIEALNTYSVEQHRLDVSALPAPAPADENKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSPGEIDELCERLNMEFCN
Ga0311331_102358004F003764N/AMQIQDDSPYLLDENPAALLAGAEIEAANLSRCLKIVRLWSQSSALPQSRHDEMVEEEQRLASIYAAILFEIGSAFGLRAADELKVRIEAACILDEWECPPAEQGLLFPIPNDSPTGASPATPRK
Ga0311331_102358005F038518N/ARFGMLDPGEEPVYRLGSYPVRVMRWIRHLLFVLNAERRDVLLAIANLEPKVAALSQIIGSAIQ
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